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| MBTL5032 | OMIC's | 3+0+0 | ECTS:7.5 | | Year / Semester | Fall Semester | | Level of Course | Second Cycle | | Status | Compulsory | | Department | DEPARTMENT of BIOTECHNOLOGY (INTERDISCIPLINARY) | | Prerequisites and co-requisites | None | | Mode of Delivery | | | Contact Hours | 14 weeks - 3 hours of lectures per week | | Lecturer | Dr. Öğr. Üyesi Cihan İNAN | | Co-Lecturer | | | Language of instruction | Turkish | | Professional practise ( internship ) | None | | | | The aim of the course: | | To achieve that Inform the practical bioinformatical skills in each of the -omics, Comprehend the relation between biology and computational world, Inform the about aims and methods of each of the -omics, Use the open-access databases and software tools |
| Programme Outcomes | CTPO | TOA | | Upon successful completion of the course, the students will be able to : | | | | PO - 1 : | Inform the practical bioinformatical skills in each of the -omics | 1,2,6 | 1,3, | | PO - 2 : | Comprehend the relation between biology and computational world | 1,2,6 | 1,3, | | PO - 3 : | Inform the about aims and methods of each of the -omics | 1,2,6 | 1,3, | | PO - 4 : | Use the open-access databases and software tools | 1,2,6 | 1,3, | | CTPO : Contribution to programme outcomes, TOA :Type of assessment (1: written exam, 2: Oral exam, 3: Homework assignment, 4: Laboratory exercise/exam, 5: Seminar / presentation, 6: Term paper), PO : Learning Outcome | | |
| Practical bioinformatical skills in genomics, transcriptomics, proteomics and metabolomics; knowledge of the major web-resources; the notion about how the methods are applied in real-life scientific research. The concise introductory material about aims and methods of each of the -omics is provided; The explanation of how the methods are applied in science; What practical advantages and limitations they have and what challenges they help to address; Which helps to solve problems; The practical skills developed are those of using open-access databases and software tools. |
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| Course Syllabus | | Week | Subject | Related Notes / Files | | Week 1 | Practical bioinformatical skills in genomics | | | Week 2 | Practical bioinformatical skills in transcriptomics | | | Week 3 | Practical bioinformatical skills in proteomics | | | Week 4 | Practical bioinformatical skills in metabolomics | | | Week 5 | Knowledge of the major web-resources; | | | Week 6 | Use of omics technologies in life sciences | | | Week 7 | The concise introductory material about aims and methods of each of the -omics is provided | | | Week 8 | Mid term exam | | | Week 9 | The concise introductory material about aims and methods of each of the -omics is provided | | | Week 10 | The concise introductory material about aims and methods of each of the -omics is provided | | | Week 11 | The explanation of how the methods are applied in science | | | Week 12 | What practical advantages and limitations they have and what challenges they help to address | | | Week 13 | Which problems could be solved by omics | | | Week 14 | The practical skills developed are those of using open-access databases and software tools | | | Week 15 | The practical skills developed are those of using open-access databases and software tools | | | Week 16 | Final exam | | | |
| 1 | OMICS: Biomedical Perspectives and Applications, Debmalya Barh, Kenneth Blum, Margaret A. Madigan | | | |
| Method of Assessment | | Type of assessment | Week No | Date | Duration (hours) | Weight (%) | | Mid-term exam | 8 | 8. hafta | | 30 | | In-term studies (second mid-term exam) | 14 | 14. hafta | | 20 | | End-of-term exam | 16 | 16. hafta | | 50 | | |
| Student Work Load and its Distribution | | Type of work | Duration (hours pw) | No of weeks / Number of activity | Hours in total per term | | Yüz yüze eğitim | 3 | 14 | 42 | | Sınıf dışı çalışma | 4 | 15 | 60 | | Arasınav için hazırlık | 4 | 7 | 28 | | Arasınav | 1 | 1 | 1 | | Ödev | 2 | 14 | 28 | | Dönem sonu sınavı için hazırlık | 3 | 15 | 45 | | Dönem sonu sınavı | 1 | 1 | 1 | | Total work load | | | 205 |
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