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| BTBL7272 | @ | 3+0+0 | ECTS:7.5 | | Year / Semester | Spring Semester | | Level of Course | Third Cycle | | Status | Elective | | Department | DEPARTMENT of FISHERIES TECHNOLOGY ENGINEERING | | Prerequisites and co-requisites | None | | Mode of Delivery | | | Contact Hours | 14 weeks - 3 hours of lectures per week | | Lecturer | Dr. Öğr. Üyesi Şebnem ATASARAL | | Co-Lecturer | Prof. Dr. İlhan ALTINOK, Doç. Dr. Rafet Çağrı ÖZTÜRK | | Language of instruction | Turkish | | Professional practise ( internship ) | None | | | | The aim of the course: | | This course provides in marine omics of various relevant topics such as genomics, proteomics, and metabolomics as related to and applied to aquaculture, marine biology and marine biotechnology. |
| Programme Outcomes | CTPO | TOA | | Upon successful completion of the course, the students will be able to : | | | | PO - 1 : | insight essential genom and genomic terms | 1,4,6 | 1, | | PO - 2 : | understand scope and methods of proteomics | 4,6,7 | 1, | | PO - 3 : | express the differences in genome content and proteome | 4,6,9 | 1, | | PO - 4 : | to be able to develop and apply research strategies for novel studies about omic fields | 4,6,9 | 1, | | CTPO : Contribution to programme outcomes, TOA :Type of assessment (1: written exam, 2: Oral exam, 3: Homework assignment, 4: Laboratory exercise/exam, 5: Seminar / presentation, 6: Term paper), PO : Learning Outcome | | |
| Genomics in the discovery and monitoring biodiversity of organisms, Genomic approaches to understanding population structure and environmental adaptation, Phylogeny of organisms, Genomic Technics and applying genomic techniques to various questions. Introduction to proteome and proteomic, Proteomic tools and applications. Metabolomic and application techniques. |
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| Course Syllabus | | Week | Subject | Related Notes / Files | | Week 1 | Omics-Based Approaches: From Genes to Metabolites | | | Week 2 | Introduction to Genomics | | | Week 3 | Functional Genomics | | | Week 4 | Genomics in the discovery and monitoring biodiversity of organisms | | | Week 5 | Genomic approaches to understanding population structure and environmental adaptation | | | Week 6 | Phylogeny of organisms | | | Week 7 | Genomic Technics and applying genomic techniques to various questions | | | Week 8 | Mid-term exam | | | Week 9 | Introduction to Proteomic | | | Week 10 | General Features of Proteins: Protein structure and function | | | Week 11 | Proteomic Methodologies | | | Week 12 | Proteomic Methodologies (continued) | | | Week 13 | Applications of Proteomics in Marine Ecology | | | Week 14 | Applications of Proteomics in Marine Ecology (continued) | | | Week 15 | Metabolomic and application techniques | | | Week 16 | End-of-term exam | | | |
| 1 | Marine OMICS: Principles and Applications, Se-Kwon Kim, CRC Press, 500 p. | | | |
| 1 | Introduction to Marine Genomics J. Mark Cock, Kristin Tessmar-Raible, Catherine Boyen, Frédérique Viard, Springer Science & Business Media, 27 Nis 2010 - 399 s. | | | 2 | Introduction to Proteomics: Tools for the New Biology, Daniel C. Liebler, Springer Science & Business Media, 2002 - 198 s. | | | 3 | Principles of Proteomics, Richard M. Twyman, Garland Science, 2013, 260 s. | | | |
| Method of Assessment | | Type of assessment | Week No | Date | Duration (hours) | Weight (%) | | Mid-term exam | 8 | | 1 | 50 | | End-of-term exam | 16 | | 1 | 50 | | |
| Student Work Load and its Distribution | | Type of work | Duration (hours pw) | No of weeks / Number of activity | Hours in total per term | | Sınıf dışı çalışma | 5 | 14 | 70 | | Arasınav için hazırlık | 5 | 3 | 15 | | Arasınav | 1.5 | 1 | 1.5 | | Dönem sonu sınavı için hazırlık | 5 | 6 | 30 | | Dönem sonu sınavı | 1.5 | 1 | 1.5 | | Total work load | | | 118 |
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